IL_5GAG_123

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

5GAG|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_123 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.1274

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5GAG|1|A|A|844
5GAG|1|A|A|845
5GAG|1|A|U|846
5GAG|1|A|U|847
5GAG|1|A|C|848
*
5GAG|1|A|G|930
5GAG|1|A|U|931
5GAG|1|A|U|932
5GAG|1|A|A|933
5GAG|1|A|U|934

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L30