IL_5GAH_036

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGG*UUACC

Length

9 nucleotides

Bulged bases

5GAH|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAH_036 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3646

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5GAH|1|A|G|879
5GAH|1|A|G|880
5GAH|1|A|G|881
5GAH|1|A|G|882
*
5GAH|1|A|U|894
5GAH|1|A|U|895
5GAH|1|A|A|896
5GAH|1|A|C|897
5GAH|1|A|C|898

Current chains

Chain A

23S rRNA

Nearby chains