IL_5GAH_070

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5GAH|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAH_070 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0916

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5GAH|1|A|C|1686
5GAH|1|A|G|1687
5GAH|1|A|U|1688
5GAH|1|A|A|1689
5GAH|1|A|A|1690
5GAH|1|A|C|1691
*
5GAH|1|A|G|1696
5GAH|1|A|G|1697
5GAH|1|A|A|1698
5GAH|1|A|G|1699
5GAH|1|A|A|1700
5GAH|1|A|A|1701
5GAH|1|A|G|1702

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2