IL_5GAH_132

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGU*ACCCUUUAAUG

Length

31 nucleotides

Bulged bases

5GAH|1|A|G|2110, 5GAH|1|A|U|2111, 5GAH|1|A|A|2114, 5GAH|1|A|G|2115, 5GAH|1|A|G|2116, 5GAH|1|A|A|2117, 5GAH|1|A|U|2118, 5GAH|1|A|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAH|1|A|C|2103
5GAH|1|A|C|2104
5GAH|1|A|U|2105
5GAH|1|A|U|2106
5GAH|1|A|G|2107
5GAH|1|A|A|2108
5GAH|1|A|U|2109
5GAH|1|A|G|2110
5GAH|1|A|U|2111
5GAH|1|A|G|2112
5GAH|1|A|U|2113
5GAH|1|A|A|2114
5GAH|1|A|G|2115
5GAH|1|A|G|2116
5GAH|1|A|A|2117
5GAH|1|A|U|2118
5GAH|1|A|A|2119
5GAH|1|A|G|2120
5GAH|1|A|G|2121
5GAH|1|A|U|2122
*
5GAH|1|A|A|2176
5GAH|1|A|C|2177
5GAH|1|A|C|2178
5GAH|1|A|C|2179
5GAH|1|A|U|2180
5GAH|1|A|U|2181
5GAH|1|A|U|2182
5GAH|1|A|A|2183
5GAH|1|A|A|2184
5GAH|1|A|U|2185
5GAH|1|A|G|2186

Current chains

Chain A

23S rRNA

Nearby chains