IL_5GIP_001
3D structure
- PDB id
- 5GIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- CUGAA*UUGUGAUG
- Length
- 13 nucleotides
- Bulged bases
- 5GIP|1|H|U|11
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69229.3
- Basepair signature
- cWW-L-tSH-L-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5GIP|1|G|C|30
5GIP|1|G|U|31
5GIP|1|G|G|32
5GIP|1|G|A|33
5GIP|1|G|A|34
*
5GIP|1|H|U|8
5GIP|1|H|U|9
5GIP|1|H|G|10
5GIP|1|H|U|11
5GIP|1|H|G|12
5GIP|1|H|A|13
5GIP|1|H|U|14
5GIP|1|H|G|15
Current chains
- Chain G
- C/D RNA
- Chain H
- C/D RNA
Nearby chains
- Chain A
- C/D box methylation guide ribonucleoprotein complex aNOP56 subunit
- Chain C
- 50S ribosomal protein L7Ae
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