IL_5GIP_004
3D structure
- PDB id
- 5GIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- UUGUGAUG*CUGAA
- Length
- 13 nucleotides
- Bulged bases
- 5GIP|1|Q|U|11
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GIP_004 not in the Motif Atlas
- Geometric match to IL_5GIP_003
- Geometric discrepancy: 0.0594
- The information below is about IL_5GIP_003
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_69229.5
- Basepair signature
- cWW-tSS-tSH-L-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5GIP|1|Q|U|8
5GIP|1|Q|U|9
5GIP|1|Q|G|10
5GIP|1|Q|U|11
5GIP|1|Q|G|12
5GIP|1|Q|A|13
5GIP|1|Q|U|14
5GIP|1|Q|G|15
*
5GIP|1|R|C|30
5GIP|1|R|U|31
5GIP|1|R|G|32
5GIP|1|R|A|33
5GIP|1|R|A|34
Current chains
- Chain Q
- C/D RNA
- Chain R
- C/D RNA
Nearby chains
- Chain B
- C/D box methylation guide ribonucleoprotein complex aNOP56 subunit
- Chain L
- C/D box methylation guide ribonucleoprotein complex aNOP56 subunit
- Chain N
- 50S ribosomal protein L7Ae
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