IL_5GM6_007

3D structure

PDB id

5GM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GU*AAC

Length

5 nucleotides

Bulged bases

5GM6|1|M|A|501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GM6_007 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.3698

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5GM6|1|L|G|34
5GM6|1|L|U|35
*
5GM6|1|M|A|500
5GM6|1|M|A|501
5GM6|1|M|C|502

Current chains

Chain L

U2 snRNA

Chain M

Pre-mRNA

Nearby chains

Chain G

U2 snRNP component HSH155

Chain J

Pre-mRNA-splicing factor RDS3