IL_5GMK_004
3D structure
- PDB id
- 5GMK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCC*GA
- Length
- 5 nucleotides
- Bulged bases
- 5GMK|1|E|C|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GMK_004 not in the Motif Atlas
- Geometric match to IL_9DE7_001
- Geometric discrepancy: 0.3512
- The information below is about IL_9DE7_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 67
Unit IDs
5GMK|1|E|U|65
5GMK|1|E|C|66
5GMK|1|E|C|67
*
5GMK|1|E|G|81
5GMK|1|E|A|82
Current chains
- Chain E
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain N
- 5'-Splicing Site
- Chain O
- Pre-mRNA-splicing factor PRP46
- Chain P
- Pre-mRNA-processing protein 45
- Chain Q
- Pre-mRNA-splicing factor SLT11
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain c
- Pre-mRNA-splicing factor CEF1
- Chain d
- Pre-mRNA-splicing factor CLF1
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