IL_5GMK_011

3D structure

PDB id

5GMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAC*GAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GMK|1|L|G|1097
5GMK|1|L|C|1098
5GMK|1|L|G|1099
5GMK|1|L|A|1100
5GMK|1|L|C|1101
*
5GMK|1|L|G|1115
5GMK|1|L|A|1116
5GMK|1|L|G|1117
5GMK|1|L|U|1118
5GMK|1|L|C|1119

Current chains

Chain L

U2 snRNA

Nearby chains

Chain a

U2 small nuclear ribonucleoprotein B''

Chain b

U2 small nuclear ribonucleoprotein A'