IL_5H4P_016
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- 5H4P|1|1|G|494
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H4P_016 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.2039
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
5H4P|1|1|C|435
5H4P|1|1|A|436
5H4P|1|1|G|437
5H4P|1|1|A|438
5H4P|1|1|C|439
5H4P|1|1|A|440
5H4P|1|1|G|494
5H4P|1|1|G|495
*
5H4P|1|1|C|618
5H4P|1|1|A|619
5H4P|1|1|U|620
5H4P|1|1|A|621
5H4P|1|1|A|622
5H4P|1|1|U|623
5H4P|1|1|G|624
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
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