IL_5H4P_046

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UCUAGACAGCCG*CGGCCGAA

Length

20 nucleotides

Bulged bases

5H4P|1|1|A|1221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H4P|1|1|U|1218
5H4P|1|1|C|1219
5H4P|1|1|U|1220
5H4P|1|1|A|1221
5H4P|1|1|G|1222
5H4P|1|1|A|1223
5H4P|1|1|C|1224
5H4P|1|1|A|1225
5H4P|1|1|G|1226
5H4P|1|1|C|1227
5H4P|1|1|C|1228
5H4P|1|1|G|1229
*
5H4P|1|1|C|1280
5H4P|1|1|G|1281
5H4P|1|1|G|1282
5H4P|1|1|C|1283
5H4P|1|1|C|1284
5H4P|1|1|G|1285
5H4P|1|1|A|1286
5H4P|1|1|A|1287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain S

60S ribosomal protein L20-A