IL_5H4P_055

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CCUGA*UGCAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H4P|1|1|C|1562
5H4P|1|1|C|1563
5H4P|1|1|U|1564
5H4P|1|1|G|1565
5H4P|1|1|A|1566
*
5H4P|1|1|U|1572
5H4P|1|1|G|1573
5H4P|1|1|C|1574
5H4P|1|1|A|1575
5H4P|1|1|G|1576
5H4P|1|1|G|1577

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L8-A

Chain X

60S ribosomal protein L25