IL_5H4P_080

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

5H4P|1|1|A|2397, 5H4P|1|1|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_080 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1416

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5H4P|1|1|G|2396
5H4P|1|1|A|2397
5H4P|1|1|A|2398
*
5H4P|1|1|U|2981
5H4P|1|1|A|2982
5H4P|1|1|C|2983
5H4P|1|1|C|2984

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain z

Cytoplasmic 60S subunit biogenesis factor REH1