IL_5H4P_089

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_089 not in the Motif Atlas

Geometric match to IL_4WF9_090

Geometric discrepancy: 0.1678

The information below is about IL_4WF9_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5H4P|1|1|G|2823
5H4P|1|1|G|2824
*
5H4P|1|1|U|2865
5H4P|1|1|U|2866
5H4P|1|1|C|2867

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain b

60S ribosomal protein L29

Chain w

60S ribosomal export protein NMD3