IL_5H4P_119

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_119 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.2829

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5H4P|1|1|A|3342
5H4P|1|1|G|3343
5H4P|1|1|A|3344
5H4P|1|1|G|3345
*
5H4P|1|1|C|3360
5H4P|1|1|G|3361
5H4P|1|1|A|3362
5H4P|1|1|U|3363

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A