IL_5H4P_132

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AACGUCU*AGCUGUU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H4P|1|1|A|665
5H4P|1|1|A|666
5H4P|1|1|C|667
5H4P|1|1|G|668
5H4P|1|1|U|669
5H4P|1|1|C|670
5H4P|1|1|U|671
*
5H4P|1|1|A|791
5H4P|1|1|G|792
5H4P|1|1|C|793
5H4P|1|1|U|794
5H4P|1|1|G|795
5H4P|1|1|U|796
5H4P|1|1|U|797

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L15-A

Chain Q

60S ribosomal protein L18-A

Chain a

60S ribosomal protein L28