IL_5H4P_133

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AUC*GAUU

Length

7 nucleotides

Bulged bases

5H4P|1|1|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_133 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.2252

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5H4P|1|1|A|755
5H4P|1|1|U|756
5H4P|1|1|C|757
*
5H4P|1|1|G|774
5H4P|1|1|A|775
5H4P|1|1|U|776
5H4P|1|1|U|777

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L18-A

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L42-A