IL_5H4P_135

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

5H4P|1|1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_135 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.2784

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5H4P|1|1|C|977
5H4P|1|1|G|978
5H4P|1|1|U|979
5H4P|1|1|A|980
5H4P|1|1|U|981
*
5H4P|1|1|A|1102
5H4P|1|1|A|1103
5H4P|1|1|G|1104

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain Q

60S ribosomal protein L18-A

Chain b

60S ribosomal protein L29