IL_5H4P_138

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

5H4P|1|1|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_138 not in the Motif Atlas

Homologous match to IL_8P9A_288

Geometric discrepancy: 0.1384

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

5H4P|1|1|U|1398
5H4P|1|1|A|1399
5H4P|1|1|G|1400
*
5H4P|1|1|C|1411
5H4P|1|1|G|1412

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain E

60S ribosomal protein L6-A

Chain e

60S ribosomal protein L32