IL_5H4P_145

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AAUGAAGC*GGGUU

Length

13 nucleotides

Bulged bases

5H4P|1|1|G|2522, 5H4P|1|1|G|2585, 5H4P|1|1|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H4P|1|1|A|2519
5H4P|1|1|A|2520
5H4P|1|1|U|2521
5H4P|1|1|G|2522
5H4P|1|1|A|2523
5H4P|1|1|A|2524
5H4P|1|1|G|2525
5H4P|1|1|C|2526
*
5H4P|1|1|G|2584
5H4P|1|1|G|2585
5H4P|1|1|G|2586
5H4P|1|1|U|2587
5H4P|1|1|U|2588

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain A

60S ribosomal protein L2-A

Chain G

60S ribosomal protein L8-A

Chain X

60S ribosomal protein L25