IL_5H4P_160

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

5H4P|1|1|U|2860

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H4P_160 not in the Motif Atlas

Homologous match to IL_8P9A_332

Geometric discrepancy: 0.2649

The information below is about IL_8P9A_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5H4P|1|1|G|2828
5H4P|1|1|U|2829
5H4P|1|1|G|2830
*
5H4P|1|1|U|2858
5H4P|1|1|U|2859
5H4P|1|1|U|2860
5H4P|1|1|U|2861
5H4P|1|1|U|2862

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain w

60S ribosomal export protein NMD3