IL_5H5U_009

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2707

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5H5U|1|A|C|274
5H5U|1|A|C|275
5H5U|1|A|U|276
5H5U|1|A|G|277
5H5U|1|A|A|278
5H5U|1|A|A|279
5H5U|1|A|U|280
5H5U|1|A|C|281
*
5H5U|1|A|G|359
5H5U|1|A|U|360
5H5U|1|A|G|361
5H5U|1|A|A|362
5H5U|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains