IL_5H5U_044

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

5H5U|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_044 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.063

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

5H5U|1|A|G|1202
5H5U|1|A|U|1203
5H5U|1|A|A|1204
5H5U|1|A|A|1205
5H5U|1|A|G|1206
*
5H5U|1|A|U|1240
5H5U|1|A|A|1241
5H5U|1|A|U|1242
5H5U|1|A|C|1243

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15