IL_5H5U_084

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5H5U|1|A|U|2111, 5H5U|1|A|G|2116, 5H5U|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_084 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.3071

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5H5U|1|A|G|2110
5H5U|1|A|U|2111
5H5U|1|A|G|2112
5H5U|1|A|U|2113
5H5U|1|A|A|2114
5H5U|1|A|G|2115
5H5U|1|A|G|2116
5H5U|1|A|A|2117
5H5U|1|A|U|2118
5H5U|1|A|A|2119
5H5U|1|A|G|2120
*
5H5U|1|A|C|2178
5H5U|1|A|C|2179

Current chains

Chain A

23S rRNA

Nearby chains