IL_5H5U_096

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_096 not in the Motif Atlas

Homologous match to IL_4WF9_094

Geometric discrepancy: 0.0973

The information below is about IL_4WF9_094

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5H5U|1|A|C|2507
5H5U|1|A|G|2508
*
5H5U|1|A|U|2580
5H5U|1|A|G|2581
5H5U|1|A|G|2582

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Peptide chain release factor 2

Chain D

50S ribosomal protein L3