IL_5H5U_100

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5H5U|1|A|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_100 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.3949

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

5H5U|1|A|C|2591
5H5U|1|A|G|2592
*
5H5U|1|A|C|2601
5H5U|1|A|A|2602
5H5U|1|A|G|2603

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Peptide chain release factor 2

Chain 5

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2