IL_5H5U_124

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

5H5U|1|h|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_124 not in the Motif Atlas

Geometric match to IL_7A0S_099

Geometric discrepancy: 0.333

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5H5U|1|h|G|75
5H5U|1|h|G|76
*
5H5U|1|h|U|93
5H5U|1|h|G|94
5H5U|1|h|C|95

Current chains

Chain h

16S rRNA

Nearby chains