IL_5H5U_135

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

5H5U|1|h|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_135 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.0709

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5H5U|1|h|U|375
5H5U|1|h|G|376
*
5H5U|1|h|U|387
5H5U|1|h|G|388
5H5U|1|h|A|389

Current chains

Chain h

16S rRNA

Nearby chains

Chain w

30S ribosomal protein S16