IL_5H5U_138

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5H5U|1|h|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_138 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.0718

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5H5U|1|h|G|446
5H5U|1|h|G|447
5H5U|1|h|A|448
5H5U|1|h|G|449
5H5U|1|h|G|450
*
5H5U|1|h|C|483
5H5U|1|h|G|484
5H5U|1|h|U|485
5H5U|1|h|U|486
5H5U|1|h|A|487
5H5U|1|h|C|488

Current chains

Chain h

16S rRNA

Nearby chains

Chain k

30S ribosomal protein S4

Chain w

30S ribosomal protein S16