IL_5H5U_143
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CGCAG*UCAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H5U_143 not in the Motif Atlas
- Homologous match to IL_5J7L_027
- Geometric discrepancy: 0.0626
- The information below is about IL_5J7L_027
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
5H5U|1|h|C|580
5H5U|1|h|G|581
5H5U|1|h|C|582
5H5U|1|h|A|583
5H5U|1|h|G|584
*
5H5U|1|h|U|757
5H5U|1|h|C|758
5H5U|1|h|A|759
5H5U|1|h|G|760
5H5U|1|h|G|761
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain o
- 30S ribosomal protein S8
- Chain s
- 30S ribosomal protein S12
- Chain v
- 30S ribosomal protein S15
- Chain x
- 30S ribosomal protein S17
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