IL_5H5U_153

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_153 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0696

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5H5U|1|h|C|779
5H5U|1|h|A|780
5H5U|1|h|A|781
5H5U|1|h|A|782
5H5U|1|h|C|783
*
5H5U|1|h|G|799
5H5U|1|h|G|800
5H5U|1|h|U|801
5H5U|1|h|A|802
5H5U|1|h|G|803

Current chains

Chain h

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S21

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain r

30S ribosomal protein S11