IL_5H5U_165
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- UG*CAA
- Length
- 5 nucleotides
- Bulged bases
- 5H5U|1|h|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5H5U_165 not in the Motif Atlas
- Homologous match to IL_5J7L_049
- Geometric discrepancy: 0.1351
- The information below is about IL_5J7L_049
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
5H5U|1|h|U|1060
5H5U|1|h|G|1061
*
5H5U|1|h|C|1195
5H5U|1|h|A|1196
5H5U|1|h|A|1197
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 3
- Alternative ribosome-rescue factor A
- Chain 4
- Peptide chain release factor 2
- Chain j
- 30S ribosomal protein S3
- Chain l
- 30S ribosomal protein S5
- Chain q
- 30S ribosomal protein S10
- Chain u
- 30S ribosomal protein S14
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