IL_5H5U_172

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_172 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1232

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5H5U|1|h|C|1259
5H5U|1|h|G|1260
5H5U|1|h|A|1261
5H5U|1|h|C|1262
5H5U|1|h|C|1263
*
5H5U|1|h|G|1272
5H5U|1|h|C|1273
5H5U|1|h|A|1274
5H5U|1|h|A|1275
5H5U|1|h|G|1276

Current chains

Chain h

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S14

Chain z

30S ribosomal protein S19