IL_5H5U_173

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_173 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.0855

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5H5U|1|h|C|1303
5H5U|1|h|G|1304
5H5U|1|h|G|1305
5H5U|1|h|A|1306
5H5U|1|h|U|1307
5H5U|1|h|U|1308
*
5H5U|1|h|A|1329
5H5U|1|h|U|1330
5H5U|1|h|G|1331
5H5U|1|h|A|1332
5H5U|1|h|A|1333
5H5U|1|h|G|1334

Current chains

Chain h

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S13