IL_5H5U_179

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_179 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0881

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5H5U|1|h|G|1416
5H5U|1|h|G|1417
5H5U|1|h|A|1418
5H5U|1|h|G|1419
*
5H5U|1|h|U|1481
5H5U|1|h|G|1482
5H5U|1|h|A|1483
5H5U|1|h|C|1484

Current chains

Chain h

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA