IL_5H5U_194

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5H5U|1|A|G|2125, 5H5U|1|A|A|2126, 5H5U|1|A|A|2163, 5H5U|1|A|C|2165, 5H5U|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_194 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.2094

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5H5U|1|A|G|2123
5H5U|1|A|G|2124
5H5U|1|A|G|2125
5H5U|1|A|A|2126
5H5U|1|A|G|2127
5H5U|1|A|G|2128
*
5H5U|1|A|C|2160
5H5U|1|A|C|2161
5H5U|1|A|G|2162
5H5U|1|A|A|2163
5H5U|1|A|C|2164
5H5U|1|A|C|2165
5H5U|1|A|U|2166
5H5U|1|A|U|2167
5H5U|1|A|G|2168
5H5U|1|A|A|2169
5H5U|1|A|A|2170
5H5U|1|A|A|2171
5H5U|1|A|U|2172
5H5U|1|A|A|2173
5H5U|1|A|C|2174
5H5U|1|A|C|2175

Current chains

Chain A

23S rRNA

Nearby chains