IL_5H5U_198

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAAGUU*GAAUGUGCCUUCGGGAAC

Length

24 nucleotides

Bulged bases

5H5U|1|h|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5H5U_198 not in the Motif Atlas

Homologous match to IL_5J7L_045

Geometric discrepancy: 0.4395

The information below is about IL_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13394.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

5H5U|1|h|G|1003
5H5U|1|h|A|1004
5H5U|1|h|A|1005
5H5U|1|h|G|1006
5H5U|1|h|U|1007
5H5U|1|h|U|1008
*
5H5U|1|h|G|1020
5H5U|1|h|A|1021
5H5U|1|h|A|1022
5H5U|1|h|U|1023
5H5U|1|h|G|1024
5H5U|1|h|U|1025
5H5U|1|h|G|1026
5H5U|1|h|C|1027
5H5U|1|h|C|1028
5H5U|1|h|U|1029
5H5U|1|h|U|1030
5H5U|1|h|C|1031
5H5U|1|h|G|1032
5H5U|1|h|G|1033
5H5U|1|h|G|1034
5H5U|1|h|A|1035
5H5U|1|h|A|1036
5H5U|1|h|C|1037

Current chains

Chain h

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S14