IL_5H9E_006

3D structure

PDB id

5H9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of E. coli Cascade bound to a PAM-containing dsDNA target (32-nt spacer) at 3.20 angstrom resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GATG*CATC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H9E|1|M|DG|15
5H9E|1|M|DA|16
5H9E|1|M|DT|17
5H9E|1|M|DG|18
*
5H9E|1|N|DC|33
5H9E|1|N|DA|34
5H9E|1|N|DT|35
5H9E|1|N|DC|36

Current chains

Chain M

DNA (47-MER) Non-target

Chain N

DNA (47-MER) Target

Nearby chains

Chain A

CRISPR system Cascade subunit CasA

Chain J

CRISPR system Cascade subunit CasD