IL_5H9F_004
3D structure
- PDB id
- 5H9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of E. coli Cascade bound to a PAM-containing dsDNA target at 2.45 angstrom resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- CAACAG*CTGTTG
- Length
- 12 nucleotides
- Bulged bases
- 5H9F|1|L|C|38, 5H9F|1|N|DG|3
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5H9F|1|L|C|35
5H9F|1|L|A|36
5H9F|1|L|A|37
5H9F|1|L|C|38
5H9F|1|L|A|39
5H9F|1|L|G|40
*
5H9F|1|N|DC|1
5H9F|1|N|DT|2
5H9F|1|N|DG|3
5H9F|1|N|DT|4
5H9F|1|N|DT|5
5H9F|1|N|DG|6
Current chains
- Chain L
- crRNA (61-MER)
- Chain N
- DNA (50-MER) Target
Nearby chains
- Chain B
- CRISPR system Cascade subunit CasB
- Chain D
- CRISPR system Cascade subunit CasC
- Chain E
- CRISPR system Cascade subunit CasC
- Chain F
- CRISPR system Cascade subunit CasC
- Chain K
- CRISPR system Cascade subunit CasE
Coloring options: