IL_5HAU_048

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_048 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0392

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5HAU|1|1A|A|1307
5HAU|1|1A|U|1308
5HAU|1|1A|G|1309
5HAU|1|1A|A|1310
5HAU|1|1A|G|1311
5HAU|1|1A|U|1312
5HAU|1|1A|A|1313
5HAU|1|1A|A|1314
*
5HAU|1|1A|U|2032
5HAU|1|1A|G|2033
5HAU|1|1A|A|2034
5HAU|1|1A|A|2035
5HAU|1|1A|A|2036
5HAU|1|1A|U|2037
5HAU|1|1A|U|2038

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L32

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L22