IL_5HAU_100

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5HAU|1|1A|A|2553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_100 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.0606

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

5HAU|1|1A|U|2533
5HAU|1|1A|G|2534
*
5HAU|1|1A|C|2551
5HAU|1|1A|A|2552
5HAU|1|1A|A|2553
5HAU|1|1A|G|2554

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L36

Chain 1L

50S ribosomal protein L13