IL_5HAU_185

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_185 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0506

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5HAU|1|2A|U|227
5HAU|1|2A|G|228
5HAU|1|2A|A|229
5HAU|1|2A|G|230
5HAU|1|2A|U|231
5HAU|1|2A|A|232
5HAU|1|2A|G|233
*
5HAU|1|2A|C|241
5HAU|1|2A|G|242
5HAU|1|2A|A|243
5HAU|1|2A|A|244
5HAU|1|2A|A|245
5HAU|1|2A|G|246

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 26

50S ribosomal protein L35

Chain 2N

50S ribosomal protein L15