IL_5HAU_213

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_213 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.0986

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5HAU|1|2A|C|1049
5HAU|1|2A|C|1050
5HAU|1|2A|C|1051
5HAU|1|2A|C|1052
5HAU|1|2A|C|1053
5HAU|1|2A|A|1054
5HAU|1|2A|A|1055
5HAU|1|2A|G|1056
*
5HAU|1|2A|C|1195
5HAU|1|2A|G|1196

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2L

50S ribosomal protein L13

Chain 2S

50S ribosomal protein L20