IL_5HAU_215

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5HAU|1|2A|U|1186, 5HAU|1|2A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_215 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0871

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5HAU|1|2A|C|1063
5HAU|1|2A|U|1064
5HAU|1|2A|A|1065
5HAU|1|2A|A|1066
5HAU|1|2A|G|1067
5HAU|1|2A|U|1068
5HAU|1|2A|G|1069
*
5HAU|1|2A|C|1184
5HAU|1|2A|U|1185
5HAU|1|2A|U|1186
5HAU|1|2A|A|1187
5HAU|1|2A|A|1188
5HAU|1|2A|G|1189

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L36

Chain 2L

50S ribosomal protein L13