IL_5HAU_219

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCAG,CUGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_219 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3246

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5HAU|1|2A|C|1097
5HAU|1|2A|C|1098
5HAU|1|2A|A|1099
5HAU|1|2A|G|1100
*
5HAU|1|2A|C|1149
5HAU|1|2A|U|1150
5HAU|1|2A|G|1151
5HAU|1|2A|G|1152

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2J

50S ribosomal protein L10