IL_5HAU_221

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_221 not in the Motif Atlas

Geometric match to IL_6CZR_171

Geometric discrepancy: 0.2437

The information below is about IL_6CZR_171

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

5HAU|1|2A|G|1107
5HAU|1|2A|G|1108
5HAU|1|2A|C|1109
*
5HAU|1|2A|G|1119
5HAU|1|2A|C|1120
5HAU|1|2A|C|1121

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2K

50S ribosomal protein L11

Chain 2O

50S ribosomal protein L16

Chain 2X

50S ribosomal protein L25