3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
5HAU|1|2A|G|1745
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HAU_245 not in the Motif Atlas
Geometric match to IL_7RQB_068
Geometric discrepancy: 0.1096
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

5HAU|1|2A|C|1732
5HAU|1|2A|G|1733
5HAU|1|2A|U|1734
5HAU|1|2A|A|1735
5HAU|1|2A|A|1736
5HAU|1|2A|C|1737
*
5HAU|1|2A|G|1742
5HAU|1|2A|G|1743
5HAU|1|2A|A|1744
5HAU|1|2A|G|1745
5HAU|1|2A|A|1746
5HAU|1|2A|A|1747
5HAU|1|2A|G|1748

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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