IL_5HAU_262

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_262 not in the Motif Atlas

Geometric match to IL_4PCJ_001

Geometric discrepancy: 0.2502

The information below is about IL_4PCJ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5HAU|1|2A|C|2126
5HAU|1|2A|G|2127
5HAU|1|2A|C|2128
*
5HAU|1|2A|G|2203
5HAU|1|2A|C|2204
5HAU|1|2A|G|2205

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2C

50S ribosomal protein L1