IL_5HAU_277

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5HAU|1|2A|A|2583, 5HAU|1|2A|C|2584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HAU_277 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0847

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5HAU|1|2A|C|2523
5HAU|1|2A|G|2524
*
5HAU|1|2A|C|2582
5HAU|1|2A|A|2583
5HAU|1|2A|C|2584
5HAU|1|2A|G|2585

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2L

50S ribosomal protein L13

Chain 2x

Cathelicidin-3