IL_5HAU_381

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGCCUGUGAAC*GGGAGGCGCCGGUGAAAUAC

Length

33 nucleotides

Bulged bases

5HAU|1|2A|U|2151, 5HAU|1|2A|U|2153, 5HAU|1|2A|C|2185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HAU|1|2A|G|2145
5HAU|1|2A|G|2146
5HAU|1|2A|A|2147
5HAU|1|2A|G|2148
5HAU|1|2A|C|2149
5HAU|1|2A|C|2150
5HAU|1|2A|U|2151
5HAU|1|2A|G|2152
5HAU|1|2A|U|2153
5HAU|1|2A|G|2154
5HAU|1|2A|A|2155
5HAU|1|2A|A|2156
5HAU|1|2A|C|2157
*
5HAU|1|2A|G|2176
5HAU|1|2A|G|2177
5HAU|1|2A|G|2178
5HAU|1|2A|A|2179
5HAU|1|2A|G|2180
5HAU|1|2A|G|2181
5HAU|1|2A|C|2182
5HAU|1|2A|G|2183
5HAU|1|2A|C|2184
5HAU|1|2A|C|2185
5HAU|1|2A|G|2186
5HAU|1|2A|G|2187
5HAU|1|2A|U|2188
5HAU|1|2A|G|2189
5HAU|1|2A|A|2190
5HAU|1|2A|A|2191
5HAU|1|2A|A|2192
5HAU|1|2A|U|2193
5HAU|1|2A|A|2194
5HAU|1|2A|C|2195

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2C

50S ribosomal protein L1